STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WDR44WD repeat domain 44. (968 aa)    
Predicted Functional Partners:
VAPB
VAMP associated protein B and C.
   
 
 0.800
VAPA
VAMP associated protein A.
   
 
 0.702
RABGEF1
Uncharacterized protein.
   
  
 0.660
OSBPL9
Oxysterol-binding protein; Belongs to the OSBP family.
    
 
 0.632
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
   0.618
YIPF6
Protein YIPF.
   
  
 0.607
AQR
Aquarius intron-binding spliceosomal factor.
      
 0.597
GALNT12
Polypeptide N-acetylgalactosaminyltransferase.
      
 0.589
LHFPL6
LHFPL tetraspan subfamily member 6.
      
 0.553
CLEC16A
C-type lectin domain containing 16A.
      
 0.549
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.