Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCDC39Coiled-coil domain containing 39. (1002 aa)    
Predicted Functional Partners:
U3I2X0_ANAPP
Uncharacterized protein.
   
 
 0.959
ARMC4
Armadillo repeat containing 4.
   
 
 0.918
DNALI1
Dynein axonemal light intermediate chain 1.
   
 
 0.910
CCDC65
Coiled-coil domain containing 65.
   
 
 0.905
RSPH4A
Radial spoke head 6 homolog A.
   
 
 0.901
DNAI1
Dynein axonemal intermediate chain 1.
   
 0.900
ENSAPLP00000025240
Uncharacterized protein.
   
 
 0.899
RSPH1
Radial spoke head component 1.
   
 
 0.888
CFAP43
Cilia and flagella associated protein 43.
   
 
 0.870
RSPH9
Radial spoke head 9 homolog.
   
 
 0.869
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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