STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTC38Tetratricopeptide repeat domain 38. (506 aa)    
Predicted Functional Partners:
MANSC4
MANSC domain containing 4.
      
 0.749
LRIT2
Leucine rich repeat, Ig-like and transmembrane domains 2.
      
 0.747
LRIT1
Leucine rich repeat, Ig-like and transmembrane domains 1.
      
 0.747
DDX28
DEAD-box helicase 28.
      
 0.706
HDHD2
Haloacid dehalogenase like hydrolase domain containing 2.
      
 0.636
ABHD14B
Abhydrolase domain containing 14B.
      
 0.613
ABHD14A
Abhydrolase domain containing 14A.
      
 0.613
BMS1
BMS1 ribosome biogenesis factor.
      
 0.611
CLIC3
Chloride intracellular channel 3.
      
 0.610
COQ9
Ubiquinone biosynthesis protein; Lipid-binding protein involved in the biosynthesis of coenzyme Q, also named ubiquinone, an essential lipid-soluble electron transporter for aerobic cellular respiration.
      
 0.610
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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