STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LRIT2Leucine rich repeat, Ig-like and transmembrane domains 2. (615 aa)    
Predicted Functional Partners:
FAM169A
Family with sequence similarity 169 member A.
    
 0.862
MANSC4
MANSC domain containing 4.
      
 0.818
LRIT1
Leucine rich repeat, Ig-like and transmembrane domains 1.
  
0.797
DDX28
DEAD-box helicase 28.
    
 0.777
CCDC126
Coiled-coil domain containing 126.
      
 0.748
TTC38
Tetratricopeptide repeat domain 38.
      
 0.747
PPEF2
Serine/threonine-protein phosphatase with EF-hands.
   
 0.741
DHX32
DEAH-box helicase 32 (putative).
   
 0.665
DQX1
DEAQ-box RNA dependent ATPase 1.
   
 0.665
BMS1
BMS1 ribosome biogenesis factor.
      
 0.636
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.