FAM120A protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FAM120A

Family with sequence similarity 120A. (1025 aa)

Predicted Functional Partners:

TTLL2

0.749

SUCO

0.749

ZMYND12

0.716

CLNS1A

0.612

NUP54

0.611

ESYT2

0.611

ENSAPLP00000021998

0.592

CAMSAP1

0.592

MANBA

0.586

NUP62

0.549

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAMSAP1	CLNS1A	ENSAPLP00000029742	ENSAPLP00000006149	Calmodulin regulated spectrin associated protein 1.	Uncharacterized protein.	0.438
CAMSAP1	FAM120A	ENSAPLP00000029742	ENSAPLP00000012770	Calmodulin regulated spectrin associated protein 1.	Family with sequence similarity 120A.	0.592
CLNS1A	CAMSAP1	ENSAPLP00000006149	ENSAPLP00000029742	Uncharacterized protein.	Calmodulin regulated spectrin associated protein 1.	0.438
CLNS1A	ENSAPLP00000021998	ENSAPLP00000006149	ENSAPLP00000021998	Uncharacterized protein.	Uncharacterized protein.	0.438
CLNS1A	ESYT2	ENSAPLP00000006149	ENSAPLP00000023107	Uncharacterized protein.	Extended synaptotagmin 2.	0.586
CLNS1A	FAM120A	ENSAPLP00000006149	ENSAPLP00000012770	Uncharacterized protein.	Family with sequence similarity 120A.	0.612
CLNS1A	MANBA	ENSAPLP00000006149	ENSAPLP00000014574	Uncharacterized protein.	Mannosidase beta.	0.451
CLNS1A	NUP54	ENSAPLP00000006149	ENSAPLP00000000519	Uncharacterized protein.	Nucleoporin 54.	0.603
ENSAPLP00000021998	CLNS1A	ENSAPLP00000021998	ENSAPLP00000006149	Uncharacterized protein.	Uncharacterized protein.	0.438
ENSAPLP00000021998	FAM120A	ENSAPLP00000021998	ENSAPLP00000012770	Uncharacterized protein.	Family with sequence similarity 120A.	0.592
ESYT2	CLNS1A	ENSAPLP00000023107	ENSAPLP00000006149	Extended synaptotagmin 2.	Uncharacterized protein.	0.586
ESYT2	FAM120A	ENSAPLP00000023107	ENSAPLP00000012770	Extended synaptotagmin 2.	Family with sequence similarity 120A.	0.611
ESYT2	NUP54	ENSAPLP00000023107	ENSAPLP00000000519	Extended synaptotagmin 2.	Nucleoporin 54.	0.490
FAM120A	CAMSAP1	ENSAPLP00000012770	ENSAPLP00000029742	Family with sequence similarity 120A.	Calmodulin regulated spectrin associated protein 1.	0.592
FAM120A	CLNS1A	ENSAPLP00000012770	ENSAPLP00000006149	Family with sequence similarity 120A.	Uncharacterized protein.	0.612
FAM120A	ENSAPLP00000021998	ENSAPLP00000012770	ENSAPLP00000021998	Family with sequence similarity 120A.	Uncharacterized protein.	0.592
FAM120A	ESYT2	ENSAPLP00000012770	ENSAPLP00000023107	Family with sequence similarity 120A.	Extended synaptotagmin 2.	0.611
FAM120A	MANBA	ENSAPLP00000012770	ENSAPLP00000014574	Family with sequence similarity 120A.	Mannosidase beta.	0.586
FAM120A	NUP54	ENSAPLP00000012770	ENSAPLP00000000519	Family with sequence similarity 120A.	Nucleoporin 54.	0.611
FAM120A	NUP62	ENSAPLP00000012770	ENSAPLP00000026615	Family with sequence similarity 120A.	Nucleoporin 62.	0.549