STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RHBDD1Rhomboid domain containing 1. (318 aa)    
Predicted Functional Partners:
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.852
SPATA5L1
Spermatogenesis associated 5 like 1.
    
 
 0.611
SPATA5
Spermatogenesis associated 5.
    
 
 0.611
KLHL31
Kelch like family member 31.
      
 0.543
TMEM214
Transmembrane protein 214.
      
 0.499
TMEM70
Transmembrane protein 70.
      
 0.495
TMEM38A
Transmembrane protein 38A.
      
 0.489
POPDC3
Popeye domain containing 3.
    
 
 0.486
PARL
Rhomboid domain-containing protein.
      
 0.463
CKAP4
Cytoskeleton associated protein 4.
    
 
 0.439
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.