PRPH2 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PRPH2

Peripherin 2. (354 aa)

Predicted Functional Partners:

GUCA1A

0.768

GUCY2F

0.718

RHO

0.670

U3ICB9_ANAPP

0.669

ABCA4

0.628

IMPG1

0.627

PROM1

0.611

PITPNM3

0.611

RPGR

0.611

PDE6B

0.595

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCA4	GUCY2F	ENSAPLP00000007771	ENSAPLP00000009486	ATP binding cassette subfamily A member 4.	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.562
ABCA4	PDE6B	ENSAPLP00000007771	ENSAPLP00000010771	ATP binding cassette subfamily A member 4.	Phosphodiesterase.	0.613
ABCA4	PRPH2	ENSAPLP00000007771	ENSAPLP00000012983	ATP binding cassette subfamily A member 4.	Peripherin 2.	0.628
ABCA4	RHO	ENSAPLP00000007771	ENSAPLP00000004771	ATP binding cassette subfamily A member 4.	Rhodopsin.	0.617
ABCA4	RPGR	ENSAPLP00000007771	ENSAPLP00000018267	ATP binding cassette subfamily A member 4.	Retinitis pigmentosa GTPase regulator.	0.607
ABCA4	U3ICB9_ANAPP	ENSAPLP00000007771	ENSAPLP00000004891	ATP binding cassette subfamily A member 4.	Rhodopsin.	0.617
GUCA1A	GUCY2F	ENSAPLP00000027269	ENSAPLP00000009486	Uncharacterized protein.	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.975
GUCA1A	IMPG1	ENSAPLP00000027269	ENSAPLP00000001841	Uncharacterized protein.	Interphotoreceptor matrix proteoglycan 1.	0.481
GUCA1A	PITPNM3	ENSAPLP00000027269	ENSAPLP00000006400	Uncharacterized protein.	PITPNM family member 3.	0.625
GUCA1A	PROM1	ENSAPLP00000027269	ENSAPLP00000006067	Uncharacterized protein.	Prominin 1.	0.430
GUCA1A	PRPH2	ENSAPLP00000027269	ENSAPLP00000012983	Uncharacterized protein.	Peripherin 2.	0.768
GUCA1A	RHO	ENSAPLP00000027269	ENSAPLP00000004771	Uncharacterized protein.	Rhodopsin.	0.656
GUCA1A	U3ICB9_ANAPP	ENSAPLP00000027269	ENSAPLP00000004891	Uncharacterized protein.	Rhodopsin.	0.633
GUCY2F	ABCA4	ENSAPLP00000009486	ENSAPLP00000007771	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	ATP binding cassette subfamily A member 4.	0.562
GUCY2F	GUCA1A	ENSAPLP00000009486	ENSAPLP00000027269	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	Uncharacterized protein.	0.975
GUCY2F	PDE6B	ENSAPLP00000009486	ENSAPLP00000010771	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	Phosphodiesterase.	0.584
GUCY2F	PRPH2	ENSAPLP00000009486	ENSAPLP00000012983	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	Peripherin 2.	0.718
GUCY2F	RHO	ENSAPLP00000009486	ENSAPLP00000004771	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	Rhodopsin.	0.603
GUCY2F	RPGR	ENSAPLP00000009486	ENSAPLP00000018267	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	Retinitis pigmentosa GTPase regulator.	0.622
GUCY2F	U3ICB9_ANAPP	ENSAPLP00000009486	ENSAPLP00000004891	Guanylate cyclase domain-containing protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	Rhodopsin.	0.603