STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PXDC1-2Uncharacterized protein. (213 aa)    
Predicted Functional Partners:
PXDC1
PX domain containing 1.
 
      0.900
DCP1B
Decapping mRNA 1B.
      
 0.594
PRPF4B
Pre-mRNA processing factor 4B.
      
 0.540
ATAD2B
ATPase family AAA domain containing 2B.
      
 0.519
ADCK1
AarF domain containing kinase 1.
      
 0.489
C2CD2
C2 calcium dependent domain containing 2.
      
 0.457
CALHM3
Calcium homeostasis modulator 3.
      
 0.439
ALKBH1
AlkB homolog 1, histone H2A dioxygenase.
      
 0.439
AMZ1
Archaelysin family metallopeptidase 1.
      
 0.438
FAM135B
Family with sequence similarity 135 member B.
      
 0.437
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.