STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HFM1Helicase for meiosis 1. (746 aa)    
Predicted Functional Partners:
PRPF8
Pre-mRNA processing factor 8.
   
 0.934
PRPF6
Pre-mRNA processing factor 6.
   
 0.909
SLC35A3
Solute carrier family 35 member A3.
 
      0.882
ASCC2
Activating signal cointegrator 1 complex subunit 2.
    
 0.875
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.854
SLC35A1
Solute carrier family 35 member A1.
 
      0.853
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.851
SNRPD1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.832
SPACA6
Ig-like domain-containing protein.
   
 0.830
SNRPG
Small nuclear ribonucleoprotein polypeptide G.
   
  0.829
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.