STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LARP4La ribonucleoprotein domain family member 4. (802 aa)    
Predicted Functional Partners:
ENSAPLP00000021455
BHLH domain-containing protein.
      
 0.749
SLC48A1
Solute carrier family 48 member 1.
      
 0.639
HDAC7
Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.
      
 0.607
GGA2
Golgi associated, gamma adaptin ear containing, ARF binding protein 2.
      
 0.605
POLD2
DNA polymerase delta 2, accessory subunit.
      
 0.597
HOXC8
Homeobox C8.
      
 0.550
ENSAPLP00000019188
Uncharacterized protein.
 
 
 
 0.527
TIPARP
TCDD inducible poly(ADP-ribose) polymerase.
      
 0.495
HOXC10
Homeobox C10.
   
  
 0.461
ASIC1
Acid sensing ion channel subunit 1; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.
      
 0.454
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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