STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRDM5PR/SET domain 5. (633 aa)    
Predicted Functional Partners:
RSRP1
Arginine and serine rich protein 1.
      
 0.610
SH3RF3
SH3 domain containing ring finger 3.
   
 0.562
SVEP1
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.
    
 0.524
RUNX1T1
RUNX1 partner transcriptional co-repressor 1.
    
 0.503
VPS53
VPS53 subunit of GARP complex.
      
 0.482
DRG2
Developmentally regulated GTP binding protein 2.
      
 0.477
RNASEL
Uncharacterized protein.
   
 0.477
LMO2
LIM domain only 2.
    
 
 0.474
MFGE8
Milk fat globule-EGF factor 8 protein.
    
 
 0.473
CBR4
Carbonyl reductase 4.
    
 
 0.472
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.