STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC3H2Ring finger and CCCH-type domains 2. (1191 aa)    
Predicted Functional Partners:
RABGAP1
RAB GTPase activating protein 1.
   
  
 0.753
CNOT1
CCR4-NOT transcription complex subunit 1.
   
 
 0.702
MYSM1
Myb like, SWIRM and MPN domains 1.
   
   0.644
STK40
Serine/threonine kinase 40.
   
 
 0.619
SLC39A12
Solute carrier family 39 member 12.
      
 0.610
ENSAPLP00000030961
Uncharacterized protein.
      
 0.610
RABGAP1L
RAB GTPase activating protein 1 like.
   
  
 0.608
HELZ
Helicase with zinc finger.
   
 
 0.605
GOLGA1
Golgin A1.
      
 0.603
PALD1
Phosphatase domain containing paladin 1.
      
 0.588
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.