RNF128 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RNF128

Ring finger protein 128. (406 aa)

Predicted Functional Partners:

OTUB1

0.929

USP8

0.667

U3ID08_ANAPP

0.632

STXBP5L

0.632

STXBP5

0.632

OSBPL2

0.631

LRRC32

0.585

IKZF4

0.585

S100Z

0.575

KIAA1217

0.555

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IKZF4	LRRC32	ENSAPLP00000016815	ENSAPLP00000009698	C2H2-type domain-containing protein.	Uncharacterized protein.	0.669
IKZF4	RNF128	ENSAPLP00000016815	ENSAPLP00000014087	C2H2-type domain-containing protein.	Ring finger protein 128.	0.585
KIAA1217	RNF128	ENSAPLP00000007472	ENSAPLP00000014087	KIAA1217.	Ring finger protein 128.	0.555
LRRC32	IKZF4	ENSAPLP00000009698	ENSAPLP00000016815	Uncharacterized protein.	C2H2-type domain-containing protein.	0.669
LRRC32	RNF128	ENSAPLP00000009698	ENSAPLP00000014087	Uncharacterized protein.	Ring finger protein 128.	0.585
OSBPL2	RNF128	ENSAPLP00000019490	ENSAPLP00000014087	Oxysterol-binding protein; Belongs to the OSBP family.	Ring finger protein 128.	0.631
OSBPL2	STXBP5	ENSAPLP00000019490	ENSAPLP00000028351	Oxysterol-binding protein; Belongs to the OSBP family.	Syntaxin binding protein 5.	0.703
OSBPL2	STXBP5L	ENSAPLP00000019490	ENSAPLP00000014263	Oxysterol-binding protein; Belongs to the OSBP family.	Syntaxin binding protein 5 like.	0.703
OSBPL2	U3ID08_ANAPP	ENSAPLP00000019490	ENSAPLP00000005130	Oxysterol-binding protein; Belongs to the OSBP family.	Ferritin; Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.	0.450
OTUB1	RNF128	ENSAPLP00000029294	ENSAPLP00000014087	OTU deubiquitinase, ubiquitin aldehyde binding 1.	Ring finger protein 128.	0.929
OTUB1	USP8	ENSAPLP00000029294	ENSAPLP00000001332	OTU deubiquitinase, ubiquitin aldehyde binding 1.	Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.	0.797
RNF128	IKZF4	ENSAPLP00000014087	ENSAPLP00000016815	Ring finger protein 128.	C2H2-type domain-containing protein.	0.585
RNF128	KIAA1217	ENSAPLP00000014087	ENSAPLP00000007472	Ring finger protein 128.	KIAA1217.	0.555
RNF128	LRRC32	ENSAPLP00000014087	ENSAPLP00000009698	Ring finger protein 128.	Uncharacterized protein.	0.585
RNF128	OSBPL2	ENSAPLP00000014087	ENSAPLP00000019490	Ring finger protein 128.	Oxysterol-binding protein; Belongs to the OSBP family.	0.631
RNF128	OTUB1	ENSAPLP00000014087	ENSAPLP00000029294	Ring finger protein 128.	OTU deubiquitinase, ubiquitin aldehyde binding 1.	0.929
RNF128	S100Z	ENSAPLP00000014087	ENSAPLP00000002194	Ring finger protein 128.	Protein S100; Belongs to the S-100 family.	0.575
RNF128	STXBP5	ENSAPLP00000014087	ENSAPLP00000028351	Ring finger protein 128.	Syntaxin binding protein 5.	0.632
RNF128	STXBP5L	ENSAPLP00000014087	ENSAPLP00000014263	Ring finger protein 128.	Syntaxin binding protein 5 like.	0.632
RNF128	U3ID08_ANAPP	ENSAPLP00000014087	ENSAPLP00000005130	Ring finger protein 128.	Ferritin; Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.	0.632