U3J477_ANAPP protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

U3J477_ANAPP

Uncharacterized protein. (257 aa)

Predicted Functional Partners:

KCNMB1

0.611

CHRNG

0.609

SETD7

0.602

BNIP3L

0.586

OPTC

0.586

MRPL55

0.510

TUBGCP4

0.491

PYURF

0.489

ZNF608

0.489

SOX21

0.487

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BNIP3L	U3J477_ANAPP	ENSAPLP00000008396	ENSAPLP00000014304	BCL2 interacting protein 3 like.	Uncharacterized protein.	0.586
CHRNG	U3J477_ANAPP	ENSAPLP00000028411	ENSAPLP00000014304	Cholinergic receptor nicotinic gamma subunit.	Uncharacterized protein.	0.609
KCNMB1	U3J477_ANAPP	ENSAPLP00000011539	ENSAPLP00000014304	Potassium calcium-activated channel subfamily M regulatory beta subunit 1.	Uncharacterized protein.	0.611
MRPL55	U3J477_ANAPP	ENSAPLP00000025398	ENSAPLP00000014304	Uncharacterized protein.	Uncharacterized protein.	0.510
OPTC	U3J477_ANAPP	ENSAPLP00000014261	ENSAPLP00000014304	Opticin.	Uncharacterized protein.	0.586
PYURF	TUBGCP4	ENSAPLP00000011245	ENSAPLP00000010511	PIGY upstream reading frame.	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	0.489
PYURF	U3J477_ANAPP	ENSAPLP00000011245	ENSAPLP00000014304	PIGY upstream reading frame.	Uncharacterized protein.	0.489
PYURF	ZNF608	ENSAPLP00000011245	ENSAPLP00000016128	PIGY upstream reading frame.	Zinc finger protein 608.	0.489
SETD7	U3J477_ANAPP	ENSAPLP00000006625	ENSAPLP00000014304	SET domain containing 7, histone lysine methyltransferase.	Uncharacterized protein.	0.602
SOX21	U3J477_ANAPP	ENSAPLP00000028126	ENSAPLP00000014304	SRY-box transcription factor 21.	Uncharacterized protein.	0.487
TUBGCP4	PYURF	ENSAPLP00000010511	ENSAPLP00000011245	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	PIGY upstream reading frame.	0.489
TUBGCP4	U3J477_ANAPP	ENSAPLP00000010511	ENSAPLP00000014304	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	Uncharacterized protein.	0.491
TUBGCP4	ZNF608	ENSAPLP00000010511	ENSAPLP00000016128	Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.	Zinc finger protein 608.	0.489
U3J477_ANAPP	BNIP3L	ENSAPLP00000014304	ENSAPLP00000008396	Uncharacterized protein.	BCL2 interacting protein 3 like.	0.586
U3J477_ANAPP	CHRNG	ENSAPLP00000014304	ENSAPLP00000028411	Uncharacterized protein.	Cholinergic receptor nicotinic gamma subunit.	0.609
U3J477_ANAPP	KCNMB1	ENSAPLP00000014304	ENSAPLP00000011539	Uncharacterized protein.	Potassium calcium-activated channel subfamily M regulatory beta subunit 1.	0.611
U3J477_ANAPP	MRPL55	ENSAPLP00000014304	ENSAPLP00000025398	Uncharacterized protein.	Uncharacterized protein.	0.510
U3J477_ANAPP	OPTC	ENSAPLP00000014304	ENSAPLP00000014261	Uncharacterized protein.	Opticin.	0.586
U3J477_ANAPP	PYURF	ENSAPLP00000014304	ENSAPLP00000011245	Uncharacterized protein.	PIGY upstream reading frame.	0.489
U3J477_ANAPP	SETD7	ENSAPLP00000014304	ENSAPLP00000006625	Uncharacterized protein.	SET domain containing 7, histone lysine methyltransferase.	0.602