DDX55 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DDX55

RNA helicase. (600 aa)

Predicted Functional Partners:

WDR12

0.953

EBNA1BP2

0.933

RSL24D1

0.926

NSUN6

0.918

NOP2

0.918

NOC3L

0.916

PES1

0.915

NSA2

0.913

NIP7

0.908

GNL3

0.902

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX55	EBNA1BP2	ENSAPLP00000014945	ENSAPLP00000029111	RNA helicase.	EBNA1 binding protein 2.	0.933
DDX55	GNL3	ENSAPLP00000014945	ENSAPLP00000004761	RNA helicase.	G protein nucleolar 3.	0.902
DDX55	NIP7	ENSAPLP00000014945	ENSAPLP00000007026	RNA helicase.	Nucleolar pre-rRNA processing protein NIP7.	0.908
DDX55	NOC3L	ENSAPLP00000014945	ENSAPLP00000012243	RNA helicase.	Nucleolar complex protein 3 homolog.	0.916
DDX55	NOP2	ENSAPLP00000014945	ENSAPLP00000017044	RNA helicase.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.918
DDX55	NSA2	ENSAPLP00000014945	ENSAPLP00000022397	RNA helicase.	NSA2 ribosome biogenesis factor.	0.913
DDX55	NSUN6	ENSAPLP00000014945	ENSAPLP00000013296	RNA helicase.	NOP2/Sun RNA methyltransferase 6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.918
DDX55	PES1	ENSAPLP00000014945	ENSAPLP00000018892	RNA helicase.	Pescadillo ribosomal biogenesis factor 1.	0.915
DDX55	RSL24D1	ENSAPLP00000014945	ENSAPLP00000028536	RNA helicase.	Ribosomal L24 domain containing 1.	0.926
DDX55	WDR12	ENSAPLP00000014945	ENSAPLP00000007314	RNA helicase.	WD repeat domain 12.	0.953
EBNA1BP2	DDX55	ENSAPLP00000029111	ENSAPLP00000014945	EBNA1 binding protein 2.	RNA helicase.	0.933
EBNA1BP2	GNL3	ENSAPLP00000029111	ENSAPLP00000004761	EBNA1 binding protein 2.	G protein nucleolar 3.	0.996
EBNA1BP2	NIP7	ENSAPLP00000029111	ENSAPLP00000007026	EBNA1 binding protein 2.	Nucleolar pre-rRNA processing protein NIP7.	0.988
EBNA1BP2	NOC3L	ENSAPLP00000029111	ENSAPLP00000012243	EBNA1 binding protein 2.	Nucleolar complex protein 3 homolog.	0.959
EBNA1BP2	NOP2	ENSAPLP00000029111	ENSAPLP00000017044	EBNA1 binding protein 2.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.972
EBNA1BP2	NSA2	ENSAPLP00000029111	ENSAPLP00000022397	EBNA1 binding protein 2.	NSA2 ribosome biogenesis factor.	0.960
EBNA1BP2	NSUN6	ENSAPLP00000029111	ENSAPLP00000013296	EBNA1 binding protein 2.	NOP2/Sun RNA methyltransferase 6; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.970
EBNA1BP2	PES1	ENSAPLP00000029111	ENSAPLP00000018892	EBNA1 binding protein 2.	Pescadillo ribosomal biogenesis factor 1.	0.997
EBNA1BP2	RSL24D1	ENSAPLP00000029111	ENSAPLP00000028536	EBNA1 binding protein 2.	Ribosomal L24 domain containing 1.	0.979
EBNA1BP2	WDR12	ENSAPLP00000029111	ENSAPLP00000007314	EBNA1 binding protein 2.	WD repeat domain 12.	0.985