PADI2 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PADI2

Peptidyl arginine deiminase 2. (664 aa)

Predicted Functional Partners:

GFM2

0.610

MAN1B1

0.602

RSL24D1

0.555

UBN1

0.447

ENSAPLP00000021782

0.445

COMT

0.438

KIAA0100

0.435

PDPR

0.430

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COMT	PADI2	ENSAPLP00000002241	ENSAPLP00000015113	Catechol O-methyltransferase; Catalyzes the O-methylation, and thereby the inactivation, of catecholamine neurotransmitters and catechol hormones.	Peptidyl arginine deiminase 2.	0.438
ENSAPLP00000021782	GFM2	ENSAPLP00000021782	ENSAPLP00000006892	Uncharacterized protein.	Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	0.612
ENSAPLP00000021782	MAN1B1	ENSAPLP00000021782	ENSAPLP00000016764	Uncharacterized protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.613
ENSAPLP00000021782	PADI2	ENSAPLP00000021782	ENSAPLP00000015113	Uncharacterized protein.	Peptidyl arginine deiminase 2.	0.445
ENSAPLP00000021782	PDPR	ENSAPLP00000021782	ENSAPLP00000029132	Uncharacterized protein.	Uncharacterized protein.	0.451
ENSAPLP00000021782	RSL24D1	ENSAPLP00000021782	ENSAPLP00000028536	Uncharacterized protein.	Ribosomal L24 domain containing 1.	0.598
ENSAPLP00000021782	UBN1	ENSAPLP00000021782	ENSAPLP00000004846	Uncharacterized protein.	Ubinuclein 1.	0.477
GFM2	ENSAPLP00000021782	ENSAPLP00000006892	ENSAPLP00000021782	Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	Uncharacterized protein.	0.612
GFM2	PADI2	ENSAPLP00000006892	ENSAPLP00000015113	Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	Peptidyl arginine deiminase 2.	0.610
GFM2	RSL24D1	ENSAPLP00000006892	ENSAPLP00000028536	Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	Ribosomal L24 domain containing 1.	0.625
KIAA0100	PADI2	ENSAPLP00000031349	ENSAPLP00000015113	KIAA0100.	Peptidyl arginine deiminase 2.	0.435
MAN1B1	ENSAPLP00000021782	ENSAPLP00000016764	ENSAPLP00000021782	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	Uncharacterized protein.	0.613
MAN1B1	PADI2	ENSAPLP00000016764	ENSAPLP00000015113	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	Peptidyl arginine deiminase 2.	0.602
MAN1B1	PDPR	ENSAPLP00000016764	ENSAPLP00000029132	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	Uncharacterized protein.	0.611
MAN1B1	UBN1	ENSAPLP00000016764	ENSAPLP00000004846	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	Ubinuclein 1.	0.611
PADI2	COMT	ENSAPLP00000015113	ENSAPLP00000002241	Peptidyl arginine deiminase 2.	Catechol O-methyltransferase; Catalyzes the O-methylation, and thereby the inactivation, of catecholamine neurotransmitters and catechol hormones.	0.438
PADI2	ENSAPLP00000021782	ENSAPLP00000015113	ENSAPLP00000021782	Peptidyl arginine deiminase 2.	Uncharacterized protein.	0.445
PADI2	GFM2	ENSAPLP00000015113	ENSAPLP00000006892	Peptidyl arginine deiminase 2.	Ribosome-releasing factor 2, mitochondrial; Mitochondrial GTPase that mediates the disassembly of ribosomes from messenger RNA at the termination of mitochondrial protein biosynthesis. Acts in collaboration with MRRF. GTP hydrolysis follows the ribosome disassembly and probably occurs on the ribosome large subunit. Not involved in the GTP-dependent ribosomal translocation step during translation elongation; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	0.610
PADI2	KIAA0100	ENSAPLP00000015113	ENSAPLP00000031349	Peptidyl arginine deiminase 2.	KIAA0100.	0.435
PADI2	MAN1B1	ENSAPLP00000015113	ENSAPLP00000016764	Peptidyl arginine deiminase 2.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.602