STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM167AProtein kish; Involved in the early part of the secretory pathway. Belongs to the KISH family. (72 aa)    
Predicted Functional Partners:
VGLL4
Vestigial like family member 4.
      
 0.645
WASL
WASP like actin nucleation promoting factor.
      
 0.623
RAB10
RAB10, member RAS oncogene family.
      
 0.611
FAM162B
Family with sequence similarity 162 member B.
      
 0.588
SCFD1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
   
  
 0.576
USP32
Uncharacterized protein; Belongs to the peptidase C19 family.
      
 0.543
CUL3
Cullin 3; Belongs to the cullin family.
      
 0.542
GOLGA5
Golgin A5.
   
  
 0.502
YPEL5
Protein yippee-like; Belongs to the yippee family.
      
 0.497
NPM3
Nucleophosmin/nucleoplasmin 3.
      
 0.497
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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