RTRAF protein (Anas platyrhynchos) - STRING interaction network

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second shell of interactors

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Predicted Interactions

gene neighborhood

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textmining

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protein homology

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[Homology]

Score

RTRAF

RNA transcription, translation and transport factor. (237 aa)

Predicted Functional Partners:

DDX1

0.971

RTCB

0.930

C2orf49

0.897

FAM98B

0.890

FAM98A

0.858

TRNAU1AP

0.748

DDHD1

0.748

TXNDC16

0.748

STYX

0.747

SMU1

0.743

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2orf49	DDX1	ENSAPLP00000023474	ENSAPLP00000010949	Chromosome 2 open reading frame 49.	DEAD-box helicase 1.	0.892
C2orf49	FAM98A	ENSAPLP00000023474	ENSAPLP00000028461	Chromosome 2 open reading frame 49.	Family with sequence similarity 98 member A.	0.497
C2orf49	FAM98B	ENSAPLP00000023474	ENSAPLP00000006500	Chromosome 2 open reading frame 49.	Family with sequence similarity 98 member B.	0.860
C2orf49	RTCB	ENSAPLP00000023474	ENSAPLP00000007872	Chromosome 2 open reading frame 49.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.910
C2orf49	RTRAF	ENSAPLP00000023474	ENSAPLP00000015931	Chromosome 2 open reading frame 49.	RNA transcription, translation and transport factor.	0.897
DDHD1	RTRAF	ENSAPLP00000002653	ENSAPLP00000015931	DDHD domain-containing protein.	RNA transcription, translation and transport factor.	0.748
DDHD1	STYX	ENSAPLP00000002653	ENSAPLP00000001979	DDHD domain-containing protein.	Serine/threonine/tyrosine interacting protein.	0.806
DDHD1	TXNDC16	ENSAPLP00000002653	ENSAPLP00000014807	DDHD domain-containing protein.	Thioredoxin domain containing 16.	0.849
DDX1	C2orf49	ENSAPLP00000010949	ENSAPLP00000023474	DEAD-box helicase 1.	Chromosome 2 open reading frame 49.	0.892
DDX1	FAM98A	ENSAPLP00000010949	ENSAPLP00000028461	DEAD-box helicase 1.	Family with sequence similarity 98 member A.	0.925
DDX1	FAM98B	ENSAPLP00000010949	ENSAPLP00000006500	DEAD-box helicase 1.	Family with sequence similarity 98 member B.	0.896
DDX1	RTCB	ENSAPLP00000010949	ENSAPLP00000007872	DEAD-box helicase 1.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.958
DDX1	RTRAF	ENSAPLP00000010949	ENSAPLP00000015931	DEAD-box helicase 1.	RNA transcription, translation and transport factor.	0.971
DDX1	TRNAU1AP	ENSAPLP00000010949	ENSAPLP00000002060	DEAD-box helicase 1.	tRNA selenocysteine 1 associated protein 1.	0.614
FAM98A	C2orf49	ENSAPLP00000028461	ENSAPLP00000023474	Family with sequence similarity 98 member A.	Chromosome 2 open reading frame 49.	0.497
FAM98A	DDX1	ENSAPLP00000028461	ENSAPLP00000010949	Family with sequence similarity 98 member A.	DEAD-box helicase 1.	0.925
FAM98A	RTCB	ENSAPLP00000028461	ENSAPLP00000007872	Family with sequence similarity 98 member A.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.620
FAM98A	RTRAF	ENSAPLP00000028461	ENSAPLP00000015931	Family with sequence similarity 98 member A.	RNA transcription, translation and transport factor.	0.858
FAM98B	C2orf49	ENSAPLP00000006500	ENSAPLP00000023474	Family with sequence similarity 98 member B.	Chromosome 2 open reading frame 49.	0.860
FAM98B	DDX1	ENSAPLP00000006500	ENSAPLP00000010949	Family with sequence similarity 98 member B.	DEAD-box helicase 1.	0.896