STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SETXSenataxin. (2815 aa)    
Predicted Functional Partners:
SCAF8
SR-related CTD associated factor 8.
   
 
 0.897
SCAF4
SR-related CTD associated factor 4.
   
 
 0.895
ENSAPLP00000019176
annotation not available
   
 
 0.845
XRN2
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
   
 
 0.780
BRCA1
BRCA1 DNA repair associated.
    
 
 0.763
RNASEH1
Ribonuclease H1; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
    
 
 0.753
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
    
 
 0.683
BTBD9
BTB domain containing 9.
      
 0.669
NRIP1
Nuclear receptor interacting protein 1.
      
 0.669
PDCL
Phosducin like.
      
 0.653
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.