STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF40APre-mRNA processing factor 40 homolog A. (1012 aa)    
Predicted Functional Partners:
RBM25
RNA binding motif protein 25.
   
 0.874
ENSAPLP00000025359
PWI domain-containing protein.
   
 0.874
CDK5RAP1
CDK5 regulatory subunit associated protein 1.
 
 
    0.835
SF3A1
Splicing factor 3a subunit 1.
   
 
 0.829
KLHL30
BTB domain-containing protein.
    
 0.754
SRRM1
Serine and arginine repetitive matrix 1.
   
 0.709
TCERG1
Transcription elongation regulator 1.
   
0.696
THRAP3
Thyroid hormone receptor associated protein 3.
   
 0.689
RBM39
RNA binding motif protein 39.
   
  0.688
ENSAPLP00000029972
RRM domain-containing protein.
   
  0.688
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.