ROPN1L protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ROPN1L

Rhophilin associated tail protein 1 like. (327 aa)

Predicted Functional Partners:

NME5

0.620

TTC29

0.620

RIBC2

0.611

USE1-2

0.611

CFAP36

0.611

TTLL7

0.611

TTLL9

0.611

AP1M1

0.604

CMBL

0.593

ENSAPLP00000028768

0.593

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AP1M1	ROPN1L	ENSAPLP00000008799	ENSAPLP00000018139	AP-1 complex subunit mu-1; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	Rhophilin associated tail protein 1 like.	0.604
AP1M1	USE1-2	ENSAPLP00000008799	ENSAPLP00000021075	AP-1 complex subunit mu-1; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	Uncharacterized protein.	0.611
CFAP36	RIBC2	ENSAPLP00000021778	ENSAPLP00000009434	Cilia and flagella associated protein 36.	RIB43A domain with coiled-coils 2.	0.635
CFAP36	ROPN1L	ENSAPLP00000021778	ENSAPLP00000018139	Cilia and flagella associated protein 36.	Rhophilin associated tail protein 1 like.	0.611
CFAP36	TTC29	ENSAPLP00000021778	ENSAPLP00000016426	Cilia and flagella associated protein 36.	Tetratricopeptide repeat domain 29.	0.611
CMBL	ROPN1L	ENSAPLP00000012914	ENSAPLP00000018139	DLH domain-containing protein.	Rhophilin associated tail protein 1 like.	0.593
ENSAPLP00000028768	ROPN1L	ENSAPLP00000028768	ENSAPLP00000018139	DLH domain-containing protein.	Rhophilin associated tail protein 1 like.	0.593
NME5	RIBC2	ENSAPLP00000013757	ENSAPLP00000009434	NME/NM23 family member 5; Belongs to the NDK family.	RIB43A domain with coiled-coils 2.	0.676
NME5	ROPN1L	ENSAPLP00000013757	ENSAPLP00000018139	NME/NM23 family member 5; Belongs to the NDK family.	Rhophilin associated tail protein 1 like.	0.620
NME5	TTC29	ENSAPLP00000013757	ENSAPLP00000016426	NME/NM23 family member 5; Belongs to the NDK family.	Tetratricopeptide repeat domain 29.	0.621
RIBC2	CFAP36	ENSAPLP00000009434	ENSAPLP00000021778	RIB43A domain with coiled-coils 2.	Cilia and flagella associated protein 36.	0.635
RIBC2	NME5	ENSAPLP00000009434	ENSAPLP00000013757	RIB43A domain with coiled-coils 2.	NME/NM23 family member 5; Belongs to the NDK family.	0.676
RIBC2	ROPN1L	ENSAPLP00000009434	ENSAPLP00000018139	RIB43A domain with coiled-coils 2.	Rhophilin associated tail protein 1 like.	0.611
RIBC2	TTC29	ENSAPLP00000009434	ENSAPLP00000016426	RIB43A domain with coiled-coils 2.	Tetratricopeptide repeat domain 29.	0.634
ROPN1L	AP1M1	ENSAPLP00000018139	ENSAPLP00000008799	Rhophilin associated tail protein 1 like.	AP-1 complex subunit mu-1; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.	0.604
ROPN1L	CFAP36	ENSAPLP00000018139	ENSAPLP00000021778	Rhophilin associated tail protein 1 like.	Cilia and flagella associated protein 36.	0.611
ROPN1L	CMBL	ENSAPLP00000018139	ENSAPLP00000012914	Rhophilin associated tail protein 1 like.	DLH domain-containing protein.	0.593
ROPN1L	ENSAPLP00000028768	ENSAPLP00000018139	ENSAPLP00000028768	Rhophilin associated tail protein 1 like.	DLH domain-containing protein.	0.593
ROPN1L	NME5	ENSAPLP00000018139	ENSAPLP00000013757	Rhophilin associated tail protein 1 like.	NME/NM23 family member 5; Belongs to the NDK family.	0.620
ROPN1L	RIBC2	ENSAPLP00000018139	ENSAPLP00000009434	Rhophilin associated tail protein 1 like.	RIB43A domain with coiled-coils 2.	0.611