STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DQX1DEAQ-box RNA dependent ATPase 1. (777 aa)    
Predicted Functional Partners:
ENSAPLP00000017486
Helicase ATP-binding domain-containing protein.
 
 
 0.969
TFIP11
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
   
 0.881
UTP3
UTP3 small subunit processome component.
   
 0.880
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.857
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.840
NOP58
NOP58 ribonucleoprotein.
   
 
 0.830
RBM17
RNA binding motif protein 17.
   
 0.823
SNRPG
Small nuclear ribonucleoprotein polypeptide G.
   
 0.816
SPACA6
Ig-like domain-containing protein.
   
 0.815
SNRPD1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.813
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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