STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP53Ubiquitin specific peptidase 53. (334 aa)    
Predicted Functional Partners:
USP54
Uncharacterized protein.
 
    
 0.911
MPHOSPH9
M-phase phosphoprotein 9.
      
 0.704
MAGI1
Membrane associated guanylate kinase, WW and PDZ domain containing 1.
    
 
 0.616
DENND4C
DENN domain containing 4C.
      
 0.611
DENND4A
DENN domain containing 4A.
      
 0.587
U3J9X0_ANAPP
SCD domain-containing protein.
      
 0.586
RHBDF2
Rhomboid 5 homolog 2.
      
 0.586
OXSM
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
      
 0.558
ZRANB1
Zinc finger RANBP2-type containing 1.
      
 0.551
RSF1
Remodeling and spacing factor 1.
      
 0.483
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.