STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP38Ubiquitin carboxyl-terminal hydrolase. (494 aa)    
Predicted Functional Partners:
WDR48
WD repeat domain 48.
   
 0.801
WDR20
WD repeat domain 20.
   
 0.786
MRPL38
Mitochondrial ribosomal protein L38.
      
 0.749
RPS27A
Ubiquitin-like domain-containing protein.
    
 0.744
ENSAPLP00000025536
Ubiquitin-like domain-containing protein.
    
 0.716
ENSAPLP00000023897
Uncharacterized protein.
    
 0.689
IGDCC4
Immunoglobulin superfamily DCC subclass member 4.
   
  
 0.637
PGAP6
Transmembrane protein 8A.
      
 0.600
FANCD2
Uncharacterized protein.
    
 0.585
DPP8
Dipeptidyl peptidase 8; Belongs to the peptidase S9B family.
   
  
 0.560
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.