STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSAPLP00000020214LAM_G_DOMAIN domain-containing protein. (283 aa)    
Predicted Functional Partners:
COL5A2
Collagen type V alpha 2 chain.
 
   
 0.939
COL11A1
Fibrillar collagen NC1 domain-containing protein.
 
      0.899
COL5A1
Fibrillar collagen NC1 domain-containing protein.
 
      0.899
COL1A1
Collagen type I alpha 1 chain.
 
   
 0.754
COL13A1
Collagen type XIII alpha 1 chain.
 
  
  0.709
COL3A1
Uncharacterized protein.
 
   
 0.663
COL9A2
Collagen type IX alpha 2 chain.
 
  
 0.650
COL28A1
VWFA domain-containing protein.
 
  
  0.552
COL8A1
Collagen type VIII alpha 1 chain.
 
 
 
 0.538
COL1A2
Collagen type I alpha 2 chain.
 
 
  
 0.505
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.