STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX23DEAD-box helicase 23; Belongs to the DEAD box helicase family. (773 aa)    
Predicted Functional Partners:
PRPF8
Pre-mRNA processing factor 8.
   
 0.998
PRPF6
Pre-mRNA processing factor 6.
   
 0.995
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.995
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
    
 0.990
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.989
TXNL4A
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.989
SNRPD1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.970
SNRPG
Small nuclear ribonucleoprotein polypeptide G.
   
 0.969
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.968
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.964
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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