STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHX8LIM homeobox 8. (295 aa)    
Predicted Functional Partners:
LMX1B
Uncharacterized protein.
 
  
   0.867
MSX1
Msh homeobox 1.
    
 
 0.626
BARX1
BARX homeobox 1.
    
 
 0.616
TBC1D13
TBC1 domain family member 13.
 
      0.579
NKX2-1
NK2 homeobox 1.
   
 
 0.577
ETV1
ETS variant 1.
    
 
 0.547
LDB2
LIM domain binding 2.
    
 0.505
LDB1
LIM domain binding 1.
    
 0.505
SHH
Sonic hedgehog signaling molecule.
    
 
 0.494
PAX9
Paired box 9.
   
  
 0.485
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.