STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPUSD4RNA pseudouridine synthase D4. (364 aa)    
Predicted Functional Partners:
PUS7
Pseudouridine synthase 7.
    
 
 0.793
MALSU1
Mitochondrial assembly of ribosomal large subunit 1.
  
 
 0.768
GTPBP3
GTP binding protein 3, mitochondrial.
  
 
 0.749
PUS7L
Pseudouridine synthase 7 like.
    
 
 0.748
MRM3
Uncharacterized protein.
  
 
 0.743
PALB2
Partner and localizer of BRCA2.
  
 
 0.698
MTG1
Mitochondrial ribosome associated GTPase 1.
   
 
 0.692
GTPBP8
GTP binding protein 8 (putative).
   
 
 0.687
MRPL47
Mitochondrial ribosomal protein L47.
    
 
 0.684
MRPL21
Mitochondrial ribosomal protein L21.
  
   0.682
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.