STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL1A1Collagen type I alpha 1 chain. (523 aa)    
Predicted Functional Partners:
ENSAPLP00000025911
LAM_G_DOMAIN domain-containing protein.
 
   
  0.773
COL25A1
Collagen type XXV alpha 1 chain.
 
 
0.761
ENSAPLP00000020214
LAM_G_DOMAIN domain-containing protein.
 
   
 0.754
LUM
Lumican.
   
 0.753
SPARC
Secreted protein acidic and cysteine rich.
   
 
 0.724
VWF
Von Willebrand factor.
   
 0.723
ENSAPLP00000024021
Uncharacterized protein.
 
 
 
0.713
AGRN
Agrin.
    
 
 0.692
SERPINH1
Serpin family H member 1; Belongs to the serpin family.
   
 0.687
DCN
Decorin; May affect the rate of fibrils formation.
   
 0.670
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.