STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FUBP3Far upstream element binding protein 3. (567 aa)    
Predicted Functional Partners:
PUF60
Poly(U) binding splicing factor 60.
   
 
 0.718
TMEM64
Transmembrane protein 64.
    
 
 0.641
PRDM4
PR/SET domain 4.
   
  
 0.626
FBXO8
F-box protein 8.
      
 0.611
QKI
QKI, KH domain containing RNA binding.
   
 
 0.597
PARN
Poly(A)-specific ribonuclease.
   
 0.546
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.540
SMARCD1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.
   
 
 0.538
KHDC4
KH domain containing 4, pre-mRNA splicing factor.
      
 0.489
KHDRBS1
KH RNA binding domain containing, signal transduction associated 1.
   
 
 0.485
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.