STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIPSNAP1Nipsnap homolog 1. (222 aa)    
Predicted Functional Partners:
PRPF39
Pre-mRNA processing factor 39.
      
 0.611
MTHFSD
Methenyltetrahydrofolate synthetase domain containing.
   
    0.575
SMIM12
Small integral membrane protein 12.
   
  
 0.569
CABP4
Calcium binding protein 4.
      
 0.555
RPS27L
40S ribosomal protein S27.
 
      0.546
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.521
VAMP3
Vesicle associated membrane protein 3.
     
 0.520
RHOH
Ras homolog family member H.
   
 
  0.511
DBT
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
   
 
  0.504
SMC1B
Structural maintenance of chromosomes protein.
   
    0.497
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.