STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX28DEAD-box helicase 28. (526 aa)    
Predicted Functional Partners:
UTP3
UTP3 small subunit processome component.
   
 0.944
MRM3
Uncharacterized protein.
  
 
 0.894
ESF1
ESF1 nucleolar pre-rRNA processing protein homolog.
   
 
 0.871
NSUN4
NOP2/Sun RNA methyltransferase 4; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.828
FASTKD2
FAST kinase domains 2.
   
 
 0.820
DDX52
Uncharacterized protein.
   
 0.794
DDX49
DEAD-box helicase 49; Belongs to the DEAD box helicase family.
  
 
0.793
PDCD11
Programmed cell death 11.
   
 0.791
BMS1
BMS1 ribosome biogenesis factor.
   
 
 0.784
LRIT1
Leucine rich repeat, Ig-like and transmembrane domains 1.
    
 0.781
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.