STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMO1LIM domain only 1. (280 aa)    
Predicted Functional Partners:
LDB2
LIM domain binding 2.
    
 0.828
LDB1
LIM domain binding 1.
    
 0.828
TAL2
TAL bHLH transcription factor 2.
    
 0.718
DUSP12
Dual specificity phosphatase 12.
    
 
 0.614
GATA3
GATA binding protein 3.
    
 0.551
CBFB
Core-binding factor subunit beta.
    
  0.538
KCTD20
Potassium channel tetramerization domain containing 20.
      
 0.535
HSD17B12
Hydroxysteroid 17-beta dehydrogenase 12; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.524
ENSAPLP00000023558
Uncharacterized protein.
    
 0.507
GATA2
Uncharacterized protein.
    
 0.507
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.