SMN1 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

SMN1

Tudor domain-containing protein. (261 aa)

Predicted Functional Partners:

DDX20

0.998

GEMIN2

0.992

GEMIN4

0.977

SPATA6

0.968

SNRPD1

0.961

GEMIN5

0.959

GEMIN8

0.959

SNRPG

0.929

SNRPF

0.914

CLNS1A

0.912

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLNS1A	GEMIN2	ENSAPLP00000006149	ENSAPLP00000011848	Uncharacterized protein.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.416
CLNS1A	GEMIN5	ENSAPLP00000006149	ENSAPLP00000006455	Uncharacterized protein.	Gem nuclear organelle associated protein 5.	0.436
CLNS1A	SMN1	ENSAPLP00000006149	ENSAPLP00000025318	Uncharacterized protein.	Tudor domain-containing protein.	0.912
CLNS1A	SNRPD1	ENSAPLP00000006149	ENSAPLP00000012020	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.985
CLNS1A	SNRPF	ENSAPLP00000006149	ENSAPLP00000025809	Uncharacterized protein.	Small nuclear ribonucleoprotein polypeptide F.	0.801
CLNS1A	SNRPG	ENSAPLP00000006149	ENSAPLP00000003436	Uncharacterized protein.	Small nuclear ribonucleoprotein polypeptide G.	0.791
CLNS1A	SPATA6	ENSAPLP00000006149	ENSAPLP00000022056	Uncharacterized protein.	Spermatogenesis associated 6.	0.899
DDX20	GEMIN2	ENSAPLP00000013658	ENSAPLP00000011848	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.997
DDX20	GEMIN4	ENSAPLP00000013658	ENSAPLP00000023160	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Gem nuclear organelle associated protein 4.	0.998
DDX20	GEMIN5	ENSAPLP00000013658	ENSAPLP00000006455	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Gem nuclear organelle associated protein 5.	0.998
DDX20	GEMIN8	ENSAPLP00000013658	ENSAPLP00000016825	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Gem nuclear organelle associated protein 8.	0.996
DDX20	SMN1	ENSAPLP00000013658	ENSAPLP00000025318	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Tudor domain-containing protein.	0.998
DDX20	SNRPD1	ENSAPLP00000013658	ENSAPLP00000012020	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.848
DDX20	SNRPF	ENSAPLP00000013658	ENSAPLP00000025809	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein polypeptide F.	0.860
DDX20	SNRPG	ENSAPLP00000013658	ENSAPLP00000003436	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein polypeptide G.	0.803
DDX20	SPATA6	ENSAPLP00000013658	ENSAPLP00000022056	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	Spermatogenesis associated 6.	0.801
GEMIN2	CLNS1A	ENSAPLP00000011848	ENSAPLP00000006149	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Uncharacterized protein.	0.416
GEMIN2	DDX20	ENSAPLP00000011848	ENSAPLP00000013658	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	DEAD-box helicase 20; Belongs to the DEAD box helicase family.	0.997
GEMIN2	GEMIN4	ENSAPLP00000011848	ENSAPLP00000023160	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Gem nuclear organelle associated protein 4.	0.990
GEMIN2	GEMIN5	ENSAPLP00000011848	ENSAPLP00000006455	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Gem nuclear organelle associated protein 5.	0.983