SMTN protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMTN

Smoothelin. (1194 aa)

Predicted Functional Partners:

CNN3

0.749

CNN2

0.734

ADGRA3

0.724

UNKL

0.721

CERK

0.712

FAM171A1

0.710

CAMKK1

0.694

TAGLN

0.631

ACTA2

0.614

MYH11

0.613

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTA2	CNN2	ENSAPLP00000005669	ENSAPLP00000027237	Actin alpha 2, smooth muscle.	Uncharacterized protein.	0.722
ACTA2	CNN3	ENSAPLP00000005669	ENSAPLP00000028315	Actin alpha 2, smooth muscle.	Calponin; Thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin Mg-ATPase activity.	0.723
ACTA2	MYH11	ENSAPLP00000005669	ENSAPLP00000005955	Actin alpha 2, smooth muscle.	Myosin heavy chain 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.991
ACTA2	SMTN	ENSAPLP00000005669	ENSAPLP00000025343	Actin alpha 2, smooth muscle.	Smoothelin.	0.614
ACTA2	TAGLN	ENSAPLP00000005669	ENSAPLP00000018882	Actin alpha 2, smooth muscle.	Transgelin.	0.849
ADGRA3	CAMKK1	ENSAPLP00000008801	ENSAPLP00000018840	Adhesion G protein-coupled receptor A3; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.647
ADGRA3	CERK	ENSAPLP00000008801	ENSAPLP00000003206	Adhesion G protein-coupled receptor A3; Belongs to the G-protein coupled receptor 2 family.	Ceramide kinase.	0.709
ADGRA3	FAM171A1	ENSAPLP00000008801	ENSAPLP00000013450	Adhesion G protein-coupled receptor A3; Belongs to the G-protein coupled receptor 2 family.	Family with sequence similarity 171 member A1.	0.723
ADGRA3	SMTN	ENSAPLP00000008801	ENSAPLP00000025343	Adhesion G protein-coupled receptor A3; Belongs to the G-protein coupled receptor 2 family.	Smoothelin.	0.724
ADGRA3	UNKL	ENSAPLP00000008801	ENSAPLP00000030909	Adhesion G protein-coupled receptor A3; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.838
CAMKK1	ADGRA3	ENSAPLP00000018840	ENSAPLP00000008801	Uncharacterized protein.	Adhesion G protein-coupled receptor A3; Belongs to the G-protein coupled receptor 2 family.	0.647
CAMKK1	CERK	ENSAPLP00000018840	ENSAPLP00000003206	Uncharacterized protein.	Ceramide kinase.	0.689
CAMKK1	FAM171A1	ENSAPLP00000018840	ENSAPLP00000013450	Uncharacterized protein.	Family with sequence similarity 171 member A1.	0.653
CAMKK1	SMTN	ENSAPLP00000018840	ENSAPLP00000025343	Uncharacterized protein.	Smoothelin.	0.694
CAMKK1	UNKL	ENSAPLP00000018840	ENSAPLP00000030909	Uncharacterized protein.	Uncharacterized protein.	0.700
CERK	ADGRA3	ENSAPLP00000003206	ENSAPLP00000008801	Ceramide kinase.	Adhesion G protein-coupled receptor A3; Belongs to the G-protein coupled receptor 2 family.	0.709
CERK	CAMKK1	ENSAPLP00000003206	ENSAPLP00000018840	Ceramide kinase.	Uncharacterized protein.	0.689
CERK	FAM171A1	ENSAPLP00000003206	ENSAPLP00000013450	Ceramide kinase.	Family with sequence similarity 171 member A1.	0.720
CERK	SMTN	ENSAPLP00000003206	ENSAPLP00000025343	Ceramide kinase.	Smoothelin.	0.712
CERK	UNKL	ENSAPLP00000003206	ENSAPLP00000030909	Ceramide kinase.	Uncharacterized protein.	0.751