STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYDE1Synapse defective Rho GTPase homolog 1. (809 aa)    
Predicted Functional Partners:
RHOF
Ras homolog family member F, filopodia associated.
    
 0.513
GCM1
Glial cells missing transcription factor 1.
      
 0.510
ILVBL
IlvB acetolactate synthase like.
      
 0.497
GEN1
GEN1 Holliday junction 5' flap endonuclease.
      
 0.491
RIMS2
C2 domain-containing protein.
      
 0.489
ENSAPLP00000029757
Uncharacterized protein.
      
 0.489
CDC42
Cell division cycle 42.
    
 0.471
PPP4R3A
Protein phosphatase 4 regulatory subunit 3A.
      
 0.459
RHOA
Ras homolog family member A.
    
 0.440
RHOC
Uncharacterized protein.
    
 0.440
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.