STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSAPLP00000025759IF rod domain-containing protein; Belongs to the intermediate filament family. (308 aa)    
Predicted Functional Partners:
SYNM
Synemin; Belongs to the intermediate filament family.
    
 0.536
DES
Desmin; Belongs to the intermediate filament family.
    
 
0.526
DCX
Doublecortin.
      
 0.516
U3IS84_ANAPP
IF rod domain-containing protein; Belongs to the intermediate filament family.
    
 
 0.516
GFAP
IF rod domain-containing protein; Belongs to the intermediate filament family.
    
 
0.516
PVALB
Parvalbumin; Belongs to the parvalbumin family.
    
 
 0.515
FOXG1
Forkhead box G1.
    
 0.507
RBFOX3
RNA binding fox-1 homolog 3.
    
 0.505
PAX6
Paired box 6.
     
 0.501
PDGFRA
Platelet-derived growth factor receptor alpha; Tyrosine-protein kinase that acts as a cell-surface receptor for PDGFA, PDGFB and PDGFC and plays an essential role in the regulation of embryonic development, cell proliferation, survival and chemotaxis. Depending on the context, promotes or inhibits cell proliferation and cell migration. Plays an important role in the differentiation of bone marrow-derived mesenchymal stem cells. Required for normal skeleton development.
      
 0.499
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.