STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRPFSmall nuclear ribonucleoprotein polypeptide F. (89 aa)    
Predicted Functional Partners:
SNRPG
Small nuclear ribonucleoprotein polypeptide G.
   
 0.999
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.999
SNRPD1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.999
SPACA6
Ig-like domain-containing protein.
   
 0.996
PRPF8
Pre-mRNA processing factor 8.
   
 0.992
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.992
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.991
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.991
SNRNP35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
   
 0.991
LSM5
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
   
 0.989
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.