ENSAPLP00000025978 protein (Anas platyrhynchos)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSAPLP00000025978

Uncharacterized protein. (625 aa)

Predicted Functional Partners:

RPS27A

0.559

ENSAPLP00000023897

0.548

ENSAPLP00000025536

0.545

TP53BP1

0.532

TRIP12

0.529

U3J5I9_ANAPP

0.528

PAXIP1

0.492

BARD1

0.489

RNF8

0.473

UBE2V2

0.473

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BARD1	ENSAPLP00000023897	ENSAPLP00000015447	ENSAPLP00000023897	BRCA1 associated RING domain 1.	Uncharacterized protein.	0.814
BARD1	ENSAPLP00000025536	ENSAPLP00000015447	ENSAPLP00000025536	BRCA1 associated RING domain 1.	Ubiquitin-like domain-containing protein.	0.895
BARD1	ENSAPLP00000025978	ENSAPLP00000015447	ENSAPLP00000025978	BRCA1 associated RING domain 1.	Uncharacterized protein.	0.489
BARD1	PAXIP1	ENSAPLP00000015447	ENSAPLP00000032056	BRCA1 associated RING domain 1.	PAX interacting protein 1.	0.857
BARD1	RNF8	ENSAPLP00000015447	ENSAPLP00000014631	BRCA1 associated RING domain 1.	E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...]	0.839
BARD1	RPS27A	ENSAPLP00000015447	ENSAPLP00000004982	BRCA1 associated RING domain 1.	Ubiquitin-like domain-containing protein.	0.933
BARD1	TP53BP1	ENSAPLP00000015447	ENSAPLP00000029185	BRCA1 associated RING domain 1.	Tumor protein p53 binding protein 1.	0.802
BARD1	U3J5I9_ANAPP	ENSAPLP00000015447	ENSAPLP00000014766	BRCA1 associated RING domain 1.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.709
BARD1	UBE2V2	ENSAPLP00000015447	ENSAPLP00000020539	BRCA1 associated RING domain 1.	Ubiquitin conjugating enzyme E2 V2.	0.597
ENSAPLP00000023897	BARD1	ENSAPLP00000023897	ENSAPLP00000015447	Uncharacterized protein.	BRCA1 associated RING domain 1.	0.814
ENSAPLP00000023897	ENSAPLP00000025536	ENSAPLP00000023897	ENSAPLP00000025536	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.987
ENSAPLP00000023897	ENSAPLP00000025978	ENSAPLP00000023897	ENSAPLP00000025978	Uncharacterized protein.	Uncharacterized protein.	0.548
ENSAPLP00000023897	PAXIP1	ENSAPLP00000023897	ENSAPLP00000032056	Uncharacterized protein.	PAX interacting protein 1.	0.429
ENSAPLP00000023897	RNF8	ENSAPLP00000023897	ENSAPLP00000014631	Uncharacterized protein.	E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...]	0.912
ENSAPLP00000023897	RPS27A	ENSAPLP00000023897	ENSAPLP00000004982	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.997
ENSAPLP00000023897	TP53BP1	ENSAPLP00000023897	ENSAPLP00000029185	Uncharacterized protein.	Tumor protein p53 binding protein 1.	0.822
ENSAPLP00000023897	TRIP12	ENSAPLP00000023897	ENSAPLP00000032206	Uncharacterized protein.	Thyroid hormone receptor interactor 12.	0.918
ENSAPLP00000023897	U3J5I9_ANAPP	ENSAPLP00000023897	ENSAPLP00000014766	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.988
ENSAPLP00000023897	UBE2V2	ENSAPLP00000023897	ENSAPLP00000020539	Uncharacterized protein.	Ubiquitin conjugating enzyme E2 V2.	0.985
ENSAPLP00000025536	BARD1	ENSAPLP00000025536	ENSAPLP00000015447	Ubiquitin-like domain-containing protein.	BRCA1 associated RING domain 1.	0.895