STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAM53AFamily with sequence similarity 53 member A. (419 aa)    
Predicted Functional Partners:
TMEM129
Transmembrane protein 129.
   
  
 0.751
TACC3
Transforming acidic coiled-coil containing protein 3.
      
 0.717
SLBP
Stem-loop binding protein.
      
 0.679
GTF2E1
General transcription factor IIE subunit 1.
      
 0.622
GTF3C3
General transcription factor IIIC subunit 3.
      
 0.622
SMG7
SMG7 nonsense mediated mRNA decay factor.
      
 0.611
MBTPS1
Membrane bound transcription factor peptidase, site 1.
      
 0.610
PKP4
Plakophilin 4.
      
 0.610
KPNA3
Importin subunit alpha; Belongs to the importin alpha family.
      
 0.600
NFYC
Nuclear transcription factor Y subunit gamma.
      
 0.586
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.