DDX3X protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DDX3X

Uncharacterized protein; Belongs to the DEAD box helicase family. (677 aa)

Predicted Functional Partners:

TBK1

0.947

EFTUD2

0.801

PRPF6

0.779

UTP14A

0.733

USP9X

0.717

CDC5L

0.696

EIF1AY

0.681

ATP5PO

0.679

DDX6

0.678

RPS4X

0.670

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP5PO	DDX3X	ENSAPLP00000006726	ENSAPLP00000026804	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.679
ATP5PO	EFTUD2	ENSAPLP00000006726	ENSAPLP00000024550	Uncharacterized protein.	Elongation factor Tu GTP binding domain containing 2.	0.682
ATP5PO	EIF1AY	ENSAPLP00000006726	ENSAPLP00000021191	Uncharacterized protein.	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.694
CDC5L	DDX3X	ENSAPLP00000028202	ENSAPLP00000026804	Cell division cycle 5 like.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.696
CDC5L	EFTUD2	ENSAPLP00000028202	ENSAPLP00000024550	Cell division cycle 5 like.	Elongation factor Tu GTP binding domain containing 2.	0.986
CDC5L	PRPF6	ENSAPLP00000028202	ENSAPLP00000021218	Cell division cycle 5 like.	Pre-mRNA processing factor 6.	0.495
DDX3X	ATP5PO	ENSAPLP00000026804	ENSAPLP00000006726	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.679
DDX3X	CDC5L	ENSAPLP00000026804	ENSAPLP00000028202	Uncharacterized protein; Belongs to the DEAD box helicase family.	Cell division cycle 5 like.	0.696
DDX3X	DDX6	ENSAPLP00000026804	ENSAPLP00000006939	Uncharacterized protein; Belongs to the DEAD box helicase family.	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	0.678
DDX3X	EFTUD2	ENSAPLP00000026804	ENSAPLP00000024550	Uncharacterized protein; Belongs to the DEAD box helicase family.	Elongation factor Tu GTP binding domain containing 2.	0.801
DDX3X	EIF1AY	ENSAPLP00000026804	ENSAPLP00000021191	Uncharacterized protein; Belongs to the DEAD box helicase family.	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.681
DDX3X	PRPF6	ENSAPLP00000026804	ENSAPLP00000021218	Uncharacterized protein; Belongs to the DEAD box helicase family.	Pre-mRNA processing factor 6.	0.779
DDX3X	RPS4X	ENSAPLP00000026804	ENSAPLP00000006464	Uncharacterized protein; Belongs to the DEAD box helicase family.	Ribosomal protein S4 X-linked.	0.670
DDX3X	TBK1	ENSAPLP00000026804	ENSAPLP00000008155	Uncharacterized protein; Belongs to the DEAD box helicase family.	TANK binding kinase 1.	0.947
DDX3X	USP9X	ENSAPLP00000026804	ENSAPLP00000028182	Uncharacterized protein; Belongs to the DEAD box helicase family.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.717
DDX3X	UTP14A	ENSAPLP00000026804	ENSAPLP00000027162	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.733
DDX6	DDX3X	ENSAPLP00000006939	ENSAPLP00000026804	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.678
DDX6	EFTUD2	ENSAPLP00000006939	ENSAPLP00000024550	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	Elongation factor Tu GTP binding domain containing 2.	0.407
DDX6	PRPF6	ENSAPLP00000006939	ENSAPLP00000021218	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	Pre-mRNA processing factor 6.	0.499
DDX6	UTP14A	ENSAPLP00000006939	ENSAPLP00000027162	DEAD-box helicase 6; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.500