RNF126 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RNF126

Ring finger protein 126. (336 aa)

Predicted Functional Partners:

GET4

0.692

ENSAPLP00000020656

0.646

ENSAPLP00000025536

0.638

PGAM5

0.620

RSPO1

0.590

RPS27A

0.585

RSPO2

0.559

ENSAPLP00000023897

0.544

LGR4

0.522

LGR5

0.522

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPLP00000020656	ENSAPLP00000025536	ENSAPLP00000020656	ENSAPLP00000025536	SGTA_dimer domain-containing protein.	Ubiquitin-like domain-containing protein.	0.454
ENSAPLP00000020656	GET4	ENSAPLP00000020656	ENSAPLP00000009309	SGTA_dimer domain-containing protein.	Guided entry of tail-anchored proteins factor 4.	0.833
ENSAPLP00000020656	RNF126	ENSAPLP00000020656	ENSAPLP00000027474	SGTA_dimer domain-containing protein.	Ring finger protein 126.	0.646
ENSAPLP00000023897	ENSAPLP00000025536	ENSAPLP00000023897	ENSAPLP00000025536	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.987
ENSAPLP00000023897	GET4	ENSAPLP00000023897	ENSAPLP00000009309	Uncharacterized protein.	Guided entry of tail-anchored proteins factor 4.	0.522
ENSAPLP00000023897	LGR4	ENSAPLP00000023897	ENSAPLP00000002700	Uncharacterized protein.	Leucine rich repeat containing G protein-coupled receptor 4.	0.521
ENSAPLP00000023897	LGR5	ENSAPLP00000023897	ENSAPLP00000015605	Uncharacterized protein.	Leucine rich repeat containing G protein-coupled receptor 5.	0.468
ENSAPLP00000023897	RNF126	ENSAPLP00000023897	ENSAPLP00000027474	Uncharacterized protein.	Ring finger protein 126.	0.544
ENSAPLP00000023897	RPS27A	ENSAPLP00000023897	ENSAPLP00000004982	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.997
ENSAPLP00000023897	RSPO1	ENSAPLP00000023897	ENSAPLP00000018841	Uncharacterized protein.	R-spondin 1.	0.564
ENSAPLP00000023897	RSPO2	ENSAPLP00000023897	ENSAPLP00000029250	Uncharacterized protein.	R-spondin 2.	0.569
ENSAPLP00000025536	ENSAPLP00000020656	ENSAPLP00000025536	ENSAPLP00000020656	Ubiquitin-like domain-containing protein.	SGTA_dimer domain-containing protein.	0.454
ENSAPLP00000025536	ENSAPLP00000023897	ENSAPLP00000025536	ENSAPLP00000023897	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.987
ENSAPLP00000025536	RNF126	ENSAPLP00000025536	ENSAPLP00000027474	Ubiquitin-like domain-containing protein.	Ring finger protein 126.	0.638
ENSAPLP00000025536	RPS27A	ENSAPLP00000025536	ENSAPLP00000004982	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.998
GET4	ENSAPLP00000020656	ENSAPLP00000009309	ENSAPLP00000020656	Guided entry of tail-anchored proteins factor 4.	SGTA_dimer domain-containing protein.	0.833
GET4	ENSAPLP00000023897	ENSAPLP00000009309	ENSAPLP00000023897	Guided entry of tail-anchored proteins factor 4.	Uncharacterized protein.	0.522
GET4	RNF126	ENSAPLP00000009309	ENSAPLP00000027474	Guided entry of tail-anchored proteins factor 4.	Ring finger protein 126.	0.692
GET4	RPS27A	ENSAPLP00000009309	ENSAPLP00000004982	Guided entry of tail-anchored proteins factor 4.	Ubiquitin-like domain-containing protein.	0.496
LGR4	ENSAPLP00000023897	ENSAPLP00000002700	ENSAPLP00000023897	Leucine rich repeat containing G protein-coupled receptor 4.	Uncharacterized protein.	0.521