STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE4AUbiquitination factor E4A. (1212 aa)    
Predicted Functional Partners:
TRIP12
Thyroid hormone receptor interactor 12.
   
 0.887
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.886
YOD1
YOD1 deubiquitinase.
    
 
 0.879
UBQLN4
Ubiquilin 4.
   
 0.784
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
  
 
 0.778
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.747
ENSAPLP00000026623
STI1 domain-containing protein.
   
 0.747
USP40
USP domain-containing protein; Belongs to the peptidase C19 family.
   
 
 0.702
SPATA5L1
Spermatogenesis associated 5 like 1.
  
 
 0.683
SPATA5
Spermatogenesis associated 5.
  
 
 0.683
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.