STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLN8TLC domain-containing protein. (284 aa)    
Predicted Functional Partners:
CLN5
Uncharacterized protein.
  
   
 0.881
CLN6
CLN6 transmembrane ER protein.
      
 0.870
TPP1
Uncharacterized protein.
    
 0.633
ENSAPLP00000020910
Uncharacterized protein.
      
 0.609
LRGUK
Uncharacterized protein.
    
 
 0.598
TIMM13
Translocase of inner mitochondrial membrane 13; Belongs to the small Tim family.
      
 0.586
MFSD8
Major facilitator superfamily domain containing 8.
      
 0.586
PPT1
Palmitoyl-protein thioesterase 1.
      
 0.570
DLGAP2
DLG associated protein 2.
      
 0.487
SPG7
SPG7 matrix AAA peptidase subunit, paraplegin.
      
 0.480
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.