STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MARCHF1Membrane associated ring-CH-type finger 1. (542 aa)    
Predicted Functional Partners:
CCDC18
Coiled-coil domain containing 18.
      
 0.610
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 
 0.530
ENSAPLP00000025878
Uncharacterized protein.
    
 
 0.463
VAV1
Calponin-homology (CH) domain-containing protein.
    
 
 0.463
HAO1
Hydroxyacid oxidase 1.
      
 0.445
LIMD2
LIM domain containing 2.
      
 0.430
FAF1
Fas associated factor 1.
    
 
 0.404
FAF2
Fas associated factor family member 2.
    
 
 0.404
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.