STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHMUncharacterized protein. (671 aa)    
Predicted Functional Partners:
ENSAPLP00000016646
RabGGT_insert domain-containing protein.
   
 0.970
RABGGTB
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.944
RAB7A
RAB7A, member RAS oncogene family.
    
 0.930
RABGEF1
Uncharacterized protein.
     
 0.914
PTAR1
Protein prenyltransferase alpha subunit repeat containing 1.
   
 0.909
RAB14
RAB14, member RAS oncogene family.
    
 0.819
RAB21
RAB21, member RAS oncogene family.
    
 0.818
RAB38
RAB38, member RAS oncogene family.
    
 0.776
RAB1A
RAB1A, member RAS oncogene family.
    
 0.759
RAB35
RAB35, member RAS oncogene family.
    
 0.744
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.