YME1L1 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

YME1L1

YME1 like 1 ATPase. (722 aa)

Predicted Functional Partners:

ENSAPLP00000028588

0.918

TIMMDC1

0.917

PARL

0.808

NDUFA13

0.799

PHB2

0.798

PHB

0.789

CLPX

0.780

MDN1

0.741

MRPL13

0.704

ATP5F1A

0.692

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP5F1A	CLPX	ENSAPLP00000011290	ENSAPLP00000014728	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Caseinolytic mitochondrial matrix peptidase chaperone subunit.	0.599
ATP5F1A	PHB2	ENSAPLP00000011290	ENSAPLP00000004715	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Prohibitin.	0.401
ATP5F1A	YME1L1	ENSAPLP00000011290	ENSAPLP00000030150	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	YME1 like 1 ATPase.	0.692
CLPX	ATP5F1A	ENSAPLP00000014728	ENSAPLP00000011290	Caseinolytic mitochondrial matrix peptidase chaperone subunit.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.599
CLPX	PHB	ENSAPLP00000014728	ENSAPLP00000026521	Caseinolytic mitochondrial matrix peptidase chaperone subunit.	Prohibitin.	0.555
CLPX	PHB2	ENSAPLP00000014728	ENSAPLP00000004715	Caseinolytic mitochondrial matrix peptidase chaperone subunit.	Prohibitin.	0.507
CLPX	YME1L1	ENSAPLP00000014728	ENSAPLP00000030150	Caseinolytic mitochondrial matrix peptidase chaperone subunit.	YME1 like 1 ATPase.	0.780
ENSAPLP00000028588	PHB2	ENSAPLP00000028588	ENSAPLP00000004715	Uncharacterized protein.	Prohibitin.	0.557
ENSAPLP00000028588	TIMMDC1	ENSAPLP00000028588	ENSAPLP00000025358	Uncharacterized protein.	Translocase of inner mitochondrial membrane domain containing 1.	0.976
ENSAPLP00000028588	YME1L1	ENSAPLP00000028588	ENSAPLP00000030150	Uncharacterized protein.	YME1 like 1 ATPase.	0.918
MDN1	YME1L1	ENSAPLP00000000578	ENSAPLP00000030150	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	YME1 like 1 ATPase.	0.741
MRPL13	YME1L1	ENSAPLP00000018566	ENSAPLP00000030150	Mitochondrial ribosomal protein L13.	YME1 like 1 ATPase.	0.704
NDUFA13	PHB2	ENSAPLP00000027817	ENSAPLP00000004715	Uncharacterized protein.	Prohibitin.	0.422
NDUFA13	TIMMDC1	ENSAPLP00000027817	ENSAPLP00000025358	Uncharacterized protein.	Translocase of inner mitochondrial membrane domain containing 1.	0.928
NDUFA13	YME1L1	ENSAPLP00000027817	ENSAPLP00000030150	Uncharacterized protein.	YME1 like 1 ATPase.	0.799
PARL	PHB	ENSAPLP00000006214	ENSAPLP00000026521	Rhomboid domain-containing protein.	Prohibitin.	0.476
PARL	PHB2	ENSAPLP00000006214	ENSAPLP00000004715	Rhomboid domain-containing protein.	Prohibitin.	0.690
PARL	YME1L1	ENSAPLP00000006214	ENSAPLP00000030150	Rhomboid domain-containing protein.	YME1 like 1 ATPase.	0.808
PHB	CLPX	ENSAPLP00000026521	ENSAPLP00000014728	Prohibitin.	Caseinolytic mitochondrial matrix peptidase chaperone subunit.	0.555
PHB	PARL	ENSAPLP00000026521	ENSAPLP00000006214	Prohibitin.	Rhomboid domain-containing protein.	0.476