STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VIMVimentin; Belongs to the intermediate filament family. (658 aa)    
Predicted Functional Partners:
ACTN2
Actinin alpha 2.
   
 
  0.880
UBAC1
UBA domain containing 1.
      
 0.749
TPM3
Tropomyosin 3; Belongs to the tropomyosin family.
   
 
 0.667
CASP6
Caspase 6; Belongs to the peptidase C14A family.
    
 0.654
CASP7
Caspase 7; Belongs to the peptidase C14A family.
    
 0.654
CASP3
Caspase 3; Belongs to the peptidase C14A family.
    
 0.654
CASP8
Caspase 8; Belongs to the peptidase C14A family.
    
 0.631
SNAI2
Uncharacterized protein.
      
 0.611
CDH2
Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.
      
 0.611
CDH1
Uncharacterized protein.
      
 0.611
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.