STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS13CVacuolar protein sorting 13 homolog C. (3554 aa)    
Predicted Functional Partners:
VPS13B
Vacuolar protein sorting 13 homolog B.
   
  
0.664
SPG11
SPG11 vesicle trafficking associated, spatacsin.
   
  
 0.650
ATP13A2
Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily.
   
 
 0.637
DNAJC6
DnaJ heat shock protein family (Hsp40) member C6.
    
 
 0.626
GAK
Cyclin G associated kinase.
    
 
 0.622
PLA2G6
Phospholipase A2 group VI.
   
  
 0.618
FBXO7
F-box protein 7.
      
 0.611
ZFYVE26
Zinc finger FYVE-type containing 26.
   
  
 0.599
EHBP1
EH domain binding protein 1.
   
  
 0.592
VPS35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.537
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.