UNC50 protein (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UNC50

Unc-50 inner nuclear membrane RNA binding protein. (259 aa)

Predicted Functional Partners:

RIC3

0.888

YIPF4

0.640

RER1

0.627

TMPPE

0.609

SLC66A3

0.609

SLC25A33

0.591

U3ICW0_ANAPP

0.586

CHRND

0.532

TMX3

0.516

YIPF7

0.505

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHRND	RIC3	ENSAPLP00000027239	ENSAPLP00000013900	Cholinergic receptor nicotinic delta subunit.	RIC3 acetylcholine receptor chaperone.	0.614
CHRND	UNC50	ENSAPLP00000027239	ENSAPLP00000032577	Cholinergic receptor nicotinic delta subunit.	Unc-50 inner nuclear membrane RNA binding protein.	0.532
RER1	UNC50	ENSAPLP00000031626	ENSAPLP00000032577	Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.	Unc-50 inner nuclear membrane RNA binding protein.	0.627
RIC3	CHRND	ENSAPLP00000013900	ENSAPLP00000027239	RIC3 acetylcholine receptor chaperone.	Cholinergic receptor nicotinic delta subunit.	0.614
RIC3	TMX3	ENSAPLP00000013900	ENSAPLP00000010008	RIC3 acetylcholine receptor chaperone.	Thioredoxin related transmembrane protein 3.	0.513
RIC3	UNC50	ENSAPLP00000013900	ENSAPLP00000032577	RIC3 acetylcholine receptor chaperone.	Unc-50 inner nuclear membrane RNA binding protein.	0.888
SLC25A33	UNC50	ENSAPLP00000009436	ENSAPLP00000032577	Solute carrier family 25 member 33; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Unc-50 inner nuclear membrane RNA binding protein.	0.591
SLC66A3	TMPPE	ENSAPLP00000029726	ENSAPLP00000000627	Solute carrier family 66 member 3.	Transmembrane protein with metallophosphoesterase domain.	0.943
SLC66A3	U3ICW0_ANAPP	ENSAPLP00000029726	ENSAPLP00000005082	Solute carrier family 66 member 3.	Uncharacterized protein.	0.431
SLC66A3	UNC50	ENSAPLP00000029726	ENSAPLP00000032577	Solute carrier family 66 member 3.	Unc-50 inner nuclear membrane RNA binding protein.	0.609
SLC66A3	YIPF4	ENSAPLP00000029726	ENSAPLP00000007194	Solute carrier family 66 member 3.	Protein YIPF.	0.747
SLC66A3	YIPF7	ENSAPLP00000029726	ENSAPLP00000009163	Solute carrier family 66 member 3.	Protein YIPF.	0.625
TMPPE	SLC66A3	ENSAPLP00000000627	ENSAPLP00000029726	Transmembrane protein with metallophosphoesterase domain.	Solute carrier family 66 member 3.	0.943
TMPPE	U3ICW0_ANAPP	ENSAPLP00000000627	ENSAPLP00000005082	Transmembrane protein with metallophosphoesterase domain.	Uncharacterized protein.	0.431
TMPPE	UNC50	ENSAPLP00000000627	ENSAPLP00000032577	Transmembrane protein with metallophosphoesterase domain.	Unc-50 inner nuclear membrane RNA binding protein.	0.609
TMPPE	YIPF4	ENSAPLP00000000627	ENSAPLP00000007194	Transmembrane protein with metallophosphoesterase domain.	Protein YIPF.	0.747
TMPPE	YIPF7	ENSAPLP00000000627	ENSAPLP00000009163	Transmembrane protein with metallophosphoesterase domain.	Protein YIPF.	0.625
TMX3	RIC3	ENSAPLP00000010008	ENSAPLP00000013900	Thioredoxin related transmembrane protein 3.	RIC3 acetylcholine receptor chaperone.	0.513
TMX3	UNC50	ENSAPLP00000010008	ENSAPLP00000032577	Thioredoxin related transmembrane protein 3.	Unc-50 inner nuclear membrane RNA binding protein.	0.516
U3ICW0_ANAPP	SLC66A3	ENSAPLP00000005082	ENSAPLP00000029726	Uncharacterized protein.	Solute carrier family 66 member 3.	0.431